DROrot_popgenomics_Europe
Data and Resources
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README.htmlHTML
About this dataset: the workflow and data description
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Illumina reads_ddRAD_MultiQC_report_raw.htmlHTML
Quality report for Illumina reads before trimming and filtering (ddRAD)
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Illumina reads_RNAseq_MultiQC_report.htmlHTML
MultiQC quality control for Illumina raw reads (RNA-seq) - after trimming and...
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Illumina_reads_ddRAD_MultiQC_report.htmlHTML
Illumina reads after trimming and filtering (ddRAD)
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Nanopore_wf-alignment reports.zipZIP
Results of the mapping of Nanopore log reads on the reference cpDNA
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ipyrad parameter file.txtTXT
ipyrad parameter file
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md6ct95ms200.vcftext/x-vcard
The output of SNP-calling created by ipyrad
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R_scripts_data.zipZIP
Data analysis in R: script (R Markdown) and associated data
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ADMIXTURE.htmlHTML
Visualization of ADMIXTURE (R Markdown knit)
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DAPC.htmlHTML
Results of DAPC (R Markdown knit)
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Fst_D_He_Ho_HIS.htmlHTML
Statistics of population genetic diversity and differentiation (R Markdown knit)
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PCoA.htmlHTML
Visualization of PCoA results (R Markdown knit)
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SNP_matrix_all_samples.snps
SNP matrix - output of ipyrad
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Alignment_cpDNA_RNA-seq.fasta
Alignment of consensus sequences of RNA-seq reads on reference cpDNA of...
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Alignment_cpDNA_Nanopore.fas
Alignment of consensus sequences of long Nanopore reads on the reference...
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IQtree_output.contree
The phylogenetic reconstruction produced by IQtree based on the SNP matrix...
Additional Info
| Field | Value |
|---|---|
| Reason for dataset retention expiration | None (No expiration) |
| Expiration datetime | 9999-01-01 |
| Source | |
| Version | |
| Author | Kristina Kuprina |
| Author Email | Kristina Kuprina |
| Maintainer | Kristina Kuprina |
| Maintainer Email | Kristina Kuprina |