Picea-glauca_ITS2

Data and Resources

• READMEHTML

  The data analysis workflow

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• Tree_ring_width_dataset.zipZIP

  Tree metadata and tree ring data

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• 0_Bioinformatics.md

  Illumina read processing in bash: trimming, filtering, VSEARCH pipeline,...

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• 1_BAI_calculation.md

  R script: Calculation of tree growth parameters (BAI, detBAI, rcsBAI)

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• 2_Growth_pH.htmlHTML

  R script and the output: Tree growth and soil pH distribution.

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• 3_Metabarcoding.htmlHTML

  R script and output: metabarcoding of RAF data

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• 4_GLM_Growth-vs-RAF-diversity.htmlHTML

  R script and the output: GLM - prediction of tree growth by RAF diversity

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• 5_Trophic-Guilds.htmlHTML

  R script and output: RAF trophic guilds

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• Data_analysis_in_R.zipZIP

  All the data and scripts necessary to run analysis in R

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• MultiQC_report_trimmed_reads.htmlHTML

  MultiQC report on quality of demultiplexed and trimmed Illumina reads...

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• MultiQC_report_raw_reads.htmlHTML

  MultiQc quality report of raw demultiplexed Illumina reads

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